chr1 : 33,861,952 33,862,633
681 bp 21 TFs 1 linked gene
This 681 bp open chromatin element is linked to HMGB4 and is bound by 21 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HMGB4 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:33,856,952 – 33,867,633
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 139 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 110 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 234 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 483 bp overlap
ChIP DE DE-FOXA2-2 530 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 153 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 671 bp overlap
ChIP DE DE-GATA4-2 681 bp overlap
ChIP foregut GSE117136.GATA4.foregut 594 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 606 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 380 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 555 bp overlap
ChIP DE DE-GATA6-2 657 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 574 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 587 bp overlap
ChIP foregut GSE117136.GATA6.foregut 605 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 331 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 544 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 342 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 427 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 150 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 350 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 320 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 244 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 134 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 75 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 579 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 404 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 421 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 258 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 385 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 121 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 171 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 158 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 372 bp overlap