Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

35 transcription factors

CRX 4 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 297 bp overlap

ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 220 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 403 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 443 bp overlap

CTCF 2 datasets

ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 238 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 255 bp overlap

DUX4 1 dataset

Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap

DUXA 1 dataset

Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 416 bp overlap

ETV7 2 datasets

Motif DE_48h DE_48h-ETV7_MA1708.2 9 bp overlap

Motif DE_60h DE_60h-ETV7_MA1708.2 9 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 307 bp overlap

FIGLA 2 datasets

Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 527 bp overlap

ChIP DE DE-FOXA2-2 527 bp overlap

GATA1 1 dataset

Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 527 bp overlap

ChIP DE DE-GATA4-2 527 bp overlap

ChIP foregut GSE117136.GATA4.foregut 319 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 527 bp overlap

ChIP DE DE-GATA6-2 527 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 527 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 527 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 493 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 527 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 527 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 527 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 513 bp overlap

ChIP foregut GSE117136.GATA6.foregut 340 bp overlap

HOXB2::ELK1 2 datasets

Motif DE_48h DE_48h-HOXB2ELK1_MA1957.1 14 bp overlap

Motif DE_60h DE_60h-HOXB2ELK1_MA1957.1 14 bp overlap

JUN 2 datasets

ChIP DE_D2 S02-DE-d2-JUN-exp1 472 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 324 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 225 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 304 bp overlap

Mecom 1 dataset

Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 445 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 406 bp overlap

PPARA::RXRA 1 dataset

Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap

PROP1 1 dataset

Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap

Plagl1 1 dataset

Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 474 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 415 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 306 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 527 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 396 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 174 bp overlap

SPIB 2 datasets

Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap

Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap

STAT3 1 dataset

ChIP HCC1187 GSE152203.STAT3.HCC1187 70 bp overlap

Spi1 2 datasets

Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 276 bp overlap

ZEB1 2 datasets

Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZNF281 2 datasets

Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap

Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap

ZNF320 1 dataset

Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap

Genome Browser