chr17:80,407,766–80,408,220

chr17 : 80,407,766 – 80,408,220

454 bp 12 TFs 8 linked genes

This 454 bp open chromatin element is linked to 8 target genes and is bound by 12 transcription factors.

Linked Genes

8 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENDOV		6.9 kb	Proximal	Proximity
RNF213-AS1		6.9 kb	Proximal	Proximity
RPTOR		136.9 kb	Distal	Multiome
RNF213		147.1 kb	Distal	Multiome
SLC26A11		187.5 kb	Distal	Multiome
SGSH		187.6 kb	Distal	Multiome
ENSG00000262580		202.0 kb	Distal	Multiome
EIF4A3		260.8 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

12 transcription factors

CTCF 3 datasets

ChIP MCF-7 ENCFF494VXA 231 bp overlap

ChIP endodermal cell ENCFF471YCZ 418 bp overlap

ChIP progenitor cell of endocrine pancreas ENCFF492KHV 388 bp overlap

FOXA1 2 datasets

ChIP MCF-7 ENCFF465LTH 253 bp overlap

ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 107 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 454 bp overlap

ChIP DE DE-FOXA2-2 454 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 454 bp overlap

ChIP DE DE-GATA4-2 454 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 454 bp overlap

ChIP DE DE-GATA6-2 454 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 425 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 422 bp overlap

GRHL2 1 dataset

ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 220 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 260 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 139 bp overlap

SMARCE1 1 dataset

ChIP MCF-7 ENCFF890MHF 223 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 394 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 451 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 202 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap