chr17 : 70,050,983 – 70,051,412
429 bp 12 TFs 1 linked gene
This 429 bp open chromatin element is linked to LINC01028 and is bound by 12 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01028 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:70,045,983 – 70,056,412
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 195 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 226 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 90 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 318 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 388 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 429 bp overlap
ChIP DE DE-FOXA2-2 425 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 365 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 424 bp overlap
ChIP DE DE-GATA4-1 429 bp overlap
ChIP DE DE-GATA4-2 429 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 429 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 180 bp overlap
ChIP foregut GSE117136.GATA4.foregut 429 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 429 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 343 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 419 bp overlap
ChIP AGS GSE51936.GATA6.AGS 275 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 375 bp overlap
ChIP DE DE-GATA6-1 429 bp overlap
ChIP DE DE-GATA6-2 429 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 429 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 380 bp overlap
ChIP foregut GSE117136.GATA6.foregut 429 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 429 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 240 bp overlap
KLF5 1 dataset
ChIP AGS GSE51705.KLF5.AGS 137 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 427 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 235 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
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