chr13 : 44,105,002 44,105,286
284 bp 22 TFs 1 linked gene
This 284 bp open chromatin element is linked to LINC00390 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00390 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:44,100,002 – 44,110,286
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 76 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 284 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 201 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 229 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 284 bp overlap
ChIP DE DE-GATA4-2 284 bp overlap
ChIP foregut GSE117136.GATA4.foregut 255 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 253 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 284 bp overlap
ChIP DE DE-GATA6-2 284 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 273 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 262 bp overlap
ChIP foregut GSE117136.GATA6.foregut 284 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 178 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 106 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 120 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 284 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 280 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 284 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 284 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 282 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 284 bp overlap
ChIP K562 ENCFF731XJJ 284 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 78 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 284 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 238 bp overlap
RAD51 2 datasets
ChIP Hep-G2 ENCSR081WLS.RAD51.Hep-G2 248 bp overlap
ChIP HepG2 ENCFF188FEZ 284 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 284 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 195 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 225 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 256 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 277 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 142 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 284 bp overlap
USF1 6 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 161 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 146 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 254 bp overlap
ChIP WTC11 ENCFF699QGS 284 bp overlap
USF2 6 datasets
ChIP GM12878 GSE97661.USF2.GM12878 160 bp overlap
ChIP H1 ENCFF434EDF 238 bp overlap
ChIP Hep-G2 ENCSR000EEF.USF2.Hep-G2 178 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF671JRC 250 bp overlap
ChIP WTC11 ENCFF139JAW 284 bp overlap