chr12 : 85,448,071 – 85,448,552
481 bp 21 TFs 0 linked genes
This 481 bp open chromatin element has no linked target genes and is bound by 21 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:85,443,071 – 85,453,552
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
CEBPA 3 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 75 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 173 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 84 bp overlap
CTCF 97 datasets
ChIP 22Rv1 ENCFF466OXN 177 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 206 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 145 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 196 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 114 bp overlap
ChIP C4-2B ENCFF821XVN 265 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 152 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 69 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 206 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 139 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 107 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 153 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 185 bp overlap
ChIP GM23338 ENCFF832KWE 121 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 109 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 65 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 65 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 152 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 60 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 188 bp overlap
ChIP HEC-1-B_FFRR-mutation GSE140868.CTCF.HEC-1-B_FFRR-mutation 53 bp overlap
ChIP HFFc6 ENCFF005CJI 53 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 172 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 163 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 72 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 188 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 62 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 90 bp overlap
ChIP MDM GSE103477.CTCF.MDM 91 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 158 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 105 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 217 bp overlap
ChIP NPC GSE115407.CTCF.NPC 367 bp overlap
ChIP OCI-LY1 ENCFF455ESK 64 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 61 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 61 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 154 bp overlap
ChIP Panc1 ENCFF056JQX 176 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 63 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 216 bp overlap
ChIP RWPE2 ENCFF911IEE 228 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 73 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 158 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 109 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 223 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 102 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 199 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 64 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 119 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 109 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 70 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 59 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 61 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 110 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 121 bp overlap
ChIP VCaP ENCFF858YQT 220 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 168 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 144 bp overlap
ChIP adrenal gland ENCFF596QXB 69 bp overlap
ChIP brain ENCFF163BBN 95 bp overlap
ChIP chondrocyte ENCFF134ORZ 228 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 71 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 112 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 97 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 76 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF476NBQ 60 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF562MJV 62 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 70 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 95 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF896AZK 64 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 72 bp overlap
ChIP endothelial cell ENCFF663LIE 161 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 194 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 186 bp overlap
ChIP gastrocnemius medialis ENCFF307PRR 60 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 58 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 55 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 145 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 85 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 205 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 131 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 481 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 196 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 92 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 60 bp overlap
ChIP nephron ENCFF411ACD 55 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 98 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 109 bp overlap
ChIP pancreas ENCSR687APM.CTCF.pancreas 57 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 73 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 55 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 77 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 221 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 224 bp overlap
ChIP stomach ENCFF918GTC 83 bp overlap
ChIP suprapubic skin ENCFF266CTJ 54 bp overlap
ChIP vagina ENCFF026NYX 64 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 275 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 102 bp overlap
FOXA1 1 dataset
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 63 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 419 bp overlap
ChIP DE DE-FOXA2-2 436 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 433 bp overlap
ChIP DE DE-GATA4-2 445 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 391 bp overlap
ChIP DE DE-GATA6-2 430 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 306 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 382 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 481 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 384 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 357 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 283 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 237 bp overlap
HOXB13 1 dataset
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 169 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 365 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 425 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 165 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 115 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
RAD21 26 datasets
ChIP GP5D GSE51234.RAD21.GP5D 73 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 112 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 80 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 93 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 273 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 249 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 166 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 301 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 116 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 97 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 110 bp overlap
ChIP LoVo_PHASES GSE51290.RAD21.LoVo_PHASES 98 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 65 bp overlap
ChIP MDM_H5N1 GSE103477.RAD21.MDM_H5N1 95 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 84 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 199 bp overlap
ChIP SLK_RAD21-KD GSE138105.RAD21.SLK_RAD21-KD 108 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.RAD21.T-47D_NaCl-isotonic-triptolide 257 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 101 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 124 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 55 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 88 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 67 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 55 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 151 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 73 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 320 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 335 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 363 bp overlap
SMC1 5 datasets
ChIP DKO GSE131606.SMC1.DKO 127 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 75 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 163 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 182 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 197 bp overlap
SMC1A 2 datasets
ChIP A-549 GSE76893.SMC1A.A-549 193 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 232 bp overlap
SMC3 6 datasets
ChIP GP5D GSE51234.SMC3.GP5D 90 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 172 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 172 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 172 bp overlap
ChIP HeLa-Kyoto_WT GSE138405.SMC3.HeLa-Kyoto_WT 83 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 264 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 179 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 179 bp overlap
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