chr12 : 78,572,056 – 78,572,453
397 bp 14 TFs 0 linked genes
This 397 bp open chromatin element has no linked target genes and is bound by 14 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:78,567,056 – 78,577,453
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 80 bp overlap
CTCF 82 datasets
ChIP 22Rv1 ENCFF466OXN 397 bp overlap
ChIP 22Rv1 ENCFF466OXN 397 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 200 bp overlap
ChIP BE2C ENCFF757SRF 252 bp overlap
ChIP C4-2B ENCFF821XVN 397 bp overlap
ChIP Caco-2 ENCFF934QYS 210 bp overlap
ChIP D721Med ENCFF513FYD 211 bp overlap
ChIP GM23338 ENCFF531QOI 227 bp overlap
ChIP GM23338 ENCFF772DML 185 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 289 bp overlap
ChIP H1 ENCFF230QSV 164 bp overlap
ChIP H1 ENCFF414GZI 195 bp overlap
ChIP H1 ENCFF764RHO 149 bp overlap
ChIP H9 ENCFF152GTF 249 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 253 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 154 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 178 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 133 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 166 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 227 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 139 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 226 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 198 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 145 bp overlap
ChIP HepG2 ENCFF757EKU 282 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 161 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 136 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 150 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 136 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 132 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 117 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 130 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 150 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 239 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 310 bp overlap
ChIP MCF-7 ENCFF198DQX 211 bp overlap
ChIP MCF-7 ENCFF414SZG 174 bp overlap
ChIP MCF-7 ENCFF494VXA 211 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 150 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 186 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 193 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 125 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 109 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 209 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 168 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 332 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 168 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 207 bp overlap
ChIP Panc1 ENCFF056JQX 397 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP SK-N-SH ENCFF575DMG 335 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 228 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 184 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 96 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 136 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 135 bp overlap
ChIP chondrocyte ENCFF134ORZ 397 bp overlap
ChIP endodermal cell ENCFF471YCZ 256 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 272 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 153 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 257 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 186 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 397 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 114 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 152 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 118 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 182 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 184 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 205 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 212 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 177 bp overlap
ChIP neural progenitor cell ENCFF420RBO 239 bp overlap
ChIP neural progenitor cell ENCFF581WPG 388 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 258 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 165 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 195 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 259 bp overlap
ChIP thyroid gland ENCFF204HWS 287 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 213 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 205 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 216 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 145 bp overlap
RAD21 31 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 178 bp overlap
ChIP A549 ENCFF047SFC 224 bp overlap
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 149 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 317 bp overlap
ChIP H1 ENCFF698EWO 186 bp overlap
ChIP H1 ENCFF967OJF 133 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 236 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 172 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 185 bp overlap
ChIP HepG2 ENCFF906QIS 210 bp overlap
ChIP MCF-7 ENCFF694KOM 269 bp overlap
ChIP MCF-7 ENCFF724VCQ 210 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 203 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 187 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 195 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 141 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 121 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 200 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 131 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 151 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 151 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 225 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 209 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 202 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 215 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 217 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 123 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 182 bp overlap
ChIP liver ENCFF485PAC 290 bp overlap
ChIP liver ENCFF522JHE 285 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 129 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 110 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 97 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 196 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 170 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 303 bp overlap
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 227 bp overlap
STAG1 6 datasets
ChIP HeLa GSE126990.STAG1.HeLa 237 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 237 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 169 bp overlap
ChIP HepG2 ENCFF843EBZ 242 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 202 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 192 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 153 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 227 bp overlap
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