chr12 : 49,626,898 49,627,168
270 bp 15 TFs 1 linked gene
This 270 bp open chromatin element is linked to PRPF40B and is bound by 15 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRPF40B 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:49,621,898 – 49,632,168
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 244 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 199 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 204 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 237 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 270 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 270 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 132 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 195 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 99 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 270 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 202 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 234 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 238 bp overlap
SRF 1 dataset
ChIP GM12878 ENCFF878IIX 250 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 220 bp overlap