chr1 : 209,354,920 209,355,235
315 bp 15 TFs 0 linked genes
This 315 bp open chromatin element has no linked target genes and is bound by 15 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:209,349,920 – 209,360,235
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 179 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 169 bp overlap
BRD4 15 datasets
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 51 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 203 bp overlap
ChIP HCC1806_DMSO_24h GSE87418.BRD4.HCC1806_DMSO_24h 192 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 142 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 68 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 231 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 260 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 244 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 160 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 181 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 110 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 247 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 184 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 315 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 231 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 66 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 118 bp overlap
CTCF 45 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 143 bp overlap
ChIP B cell ENCFF500PZO 86 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 93 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 110 bp overlap
ChIP C4-2B ENCFF821XVN 171 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 180 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 104 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 84 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 310 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 97 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 50 bp overlap
ChIP GM23338 ENCFF832KWE 113 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 185 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 109 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 72 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 124 bp overlap
ChIP SEM GSE117864.CTCF.SEM 84 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 130 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 135 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 115 bp overlap
ChIP brain ENCFF099ASU 69 bp overlap
ChIP chondrocyte ENCFF134ORZ 59 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 103 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 71 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 51 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 68 bp overlap
ChIP endothelial cell ENCFF663LIE 80 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 62 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 117 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 97 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 116 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 93 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 154 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 77 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 85 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 83 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 106 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 96 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 132 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 56 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 79 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 189 bp overlap
ChIP spleen ENCFF121QGK 57 bp overlap
ChIP spleen ENCFF326DUY 67 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 77 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 199 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 60 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 150 bp overlap
RAD21 3 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 142 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 68 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 144 bp overlap
SMC1 1 dataset
ChIP HMEC-1 GSE101921.SMC1.HMEC-1 137 bp overlap
SMC1A 2 datasets
ChIP HCT-116 GSE112000.SMC1A.HCT-116 242 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 115 bp overlap
STAG1 1 dataset
ChIP HMEC-1 GSE101921.STAG1.HMEC-1 129 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 138 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 168 bp overlap