chr12 : 18,549,679 – 18,549,892
213 bp 19 TFs 0 linked genes
This 213 bp open chromatin element has no linked target genes and is bound by 19 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:18,544,679 – 18,554,892
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 155 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 203 bp overlap
CTCF 173 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 211 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 206 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 204 bp overlap
ChIP A549 ENCFF034FVO 213 bp overlap
ChIP AG04450 ENCFF116DJL 213 bp overlap
ChIP AG09309 ENCFF478XPS 213 bp overlap
ChIP AG10803 ENCFF549AQK 213 bp overlap
ChIP BE2C ENCFF757SRF 213 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 213 bp overlap
ChIP Caco-2 ENCFF753NZV 213 bp overlap
ChIP Caco-2 ENCFF934QYS 211 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 138 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 145 bp overlap
ChIP GM23338 ENCFF531QOI 213 bp overlap
ChIP GM23338 ENCFF531QOI 121 bp overlap
ChIP GM23338 ENCFF772DML 66 bp overlap
ChIP GM23338 ENCFF832KWE 213 bp overlap
ChIP H1 ENCFF414GZI 193 bp overlap
ChIP H1 ENCFF764RHO 129 bp overlap
ChIP H9 ENCFF152GTF 213 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 206 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 164 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 213 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 213 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 213 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 213 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 213 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 213 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 208 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 179 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 168 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 213 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 213 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 173 bp overlap
ChIP HCT116 ENCFF003KHP 213 bp overlap
ChIP HCT116 ENCFF209YMI 213 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 171 bp overlap
ChIP HEK293 ENCFF498RMM 213 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 188 bp overlap
ChIP HFFc6 ENCFF005CJI 127 bp overlap
ChIP HFFc6 ENCFF005CJI 209 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 124 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 213 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 191 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 213 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 133 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 213 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 150 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 107 bp overlap
ChIP HepG2 ENCFF127KUP 201 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 213 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 205 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 182 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 107 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 109 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 107 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 113 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 146 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 213 bp overlap
ChIP K562 ENCFF111MGE 211 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 193 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 145 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 192 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 197 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 151 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 178 bp overlap
ChIP MCF-7 ENCFF139NQI 213 bp overlap
ChIP MCF-7 ENCFF198DQX 213 bp overlap
ChIP MCF-7 ENCFF210JUZ 213 bp overlap
ChIP MCF-7 ENCFF494VXA 213 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 212 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 180 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 178 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 162 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 116 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 120 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 213 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 212 bp overlap
ChIP PC-3 ENCFF487TUI 213 bp overlap
ChIP PC-3 ENCFF487TUI 138 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 213 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 183 bp overlap
ChIP SEM GSE117864.CTCF.SEM 141 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 172 bp overlap
ChIP SK-N-SH ENCFF731NJX 213 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 213 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 213 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 213 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 161 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 203 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 177 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 153 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 191 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 213 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 198 bp overlap
ChIP astrocyte ENCFF042YJV 213 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 207 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 213 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 213 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 213 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 191 bp overlap
ChIP brain ENCFF163BBN 135 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 213 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 213 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 213 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 213 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 202 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 180 bp overlap
ChIP chondrocyte ENCFF134ORZ 213 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 213 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 180 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 131 bp overlap
ChIP endodermal cell ENCFF471YCZ 213 bp overlap
ChIP endothelial cell ENCFF663LIE 213 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 204 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 213 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 173 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 213 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 189 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 190 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 213 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 213 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 164 bp overlap
ChIP fibroblast_LUNG ENCSR000DVA.CTCF.fibroblast_LUNG 159 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 154 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 149 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 205 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 193 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 213 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 213 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 209 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 213 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 213 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 128 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 213 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 169 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 161 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 163 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 190 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 190 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 149 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
ChIP keratinocyte ENCFF667ULX 213 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 213 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 197 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 213 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 174 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 213 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 103 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 168 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 173 bp overlap
ChIP nephron ENCFF972IQB 150 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 213 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 213 bp overlap
ChIP neural cell ENCFF335ADI 213 bp overlap
ChIP neural crest cell ENCFF182LWK 134 bp overlap
ChIP neural crest cell ENCFF182LWK 143 bp overlap
ChIP neural progenitor cell ENCFF420RBO 206 bp overlap
ChIP neural progenitor cell ENCFF581WPG 213 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 213 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 148 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 213 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 146 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 158 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 166 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 213 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 213 bp overlap
ChIP right atrium auricular region ENCFF696NTN 213 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 213 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 213 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 121 bp overlap
ESR1 3 datasets
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 168 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 188 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 163 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 93 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 88 bp overlap
ChIP H1 ENCFF967OJF 213 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 213 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 213 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 213 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 115 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 96 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 158 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 213 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 176 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 155 bp overlap
ChIP hiPSC_IID12 GSE106870.RAD21.hiPSC_IID12 127 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 158 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 177 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 203 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 213 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 154 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SOX8 2 datasets
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 164 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 198 bp overlap
STAT1 3 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 192 bp overlap
ChIP K-562 ENCSR000EHK.STAT1.K-562 103 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 174 bp overlap
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