chr11 : 89,437,425 – 89,437,725
300 bp 11 TFs 0 linked genes
This 300 bp open chromatin element has no linked target genes and is bound by 11 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:89,432,425 – 89,442,725
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
11 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 113 bp overlap
CTCF 107 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 281 bp overlap
ChIP A673 ENCFF123WOM 300 bp overlap
ChIP C4-2B ENCFF821XVN 300 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 118 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 228 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 164 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 152 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 155 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 133 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 98 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 150 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 141 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 145 bp overlap
ChIP GM23338 ENCFF531QOI 185 bp overlap
ChIP GM23338 ENCFF772DML 127 bp overlap
ChIP GM23338 ENCFF832KWE 300 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 212 bp overlap
ChIP H1 ENCFF764RHO 237 bp overlap
ChIP H9 ENCFF152GTF 215 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 246 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 266 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 227 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 253 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 215 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 237 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 271 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 234 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 208 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 156 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 224 bp overlap
ChIP HCT116 ENCFF003KHP 282 bp overlap
ChIP HEK293 ENCFF498RMM 219 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 166 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 132 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 267 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 186 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 235 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 115 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP IMR-90 ENCFF887MRH 241 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 145 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 141 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 97 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 103 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 162 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 231 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 99 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 233 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 213 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 116 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 287 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 166 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 197 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 154 bp overlap
ChIP PC-3 ENCFF487TUI 300 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 300 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 245 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 156 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 161 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 193 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 114 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 142 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 183 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 210 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 171 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 300 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 110 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 261 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 257 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 131 bp overlap
ChIP endodermal cell ENCFF471YCZ 213 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 275 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 205 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 127 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 175 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 226 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 242 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 122 bp overlap
ChIP fibroblast_MAMMARY ENCSR000DUU.CTCF.fibroblast_MAMMARY 126 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 217 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 168 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 248 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 300 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 215 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 201 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 223 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 191 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 224 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 273 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 191 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 218 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 249 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 299 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 166 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 201 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 243 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 244 bp overlap
ChIP neural progenitor cell ENCFF420RBO 300 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 239 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 178 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 213 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 267 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 103 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 103 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 254 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 133 bp overlap
ChIP H1 ENCFF967OJF 208 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 209 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 231 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 149 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 263 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 158 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 203 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 218 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 205 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 176 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 173 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 195 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 261 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 170 bp overlap
RELA 1 dataset
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 96 bp overlap
SMC1 2 datasets
ChIP HCAEC GSE101921.SMC1.HCAEC 281 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 208 bp overlap
SMC1A 4 datasets
ChIP A-549 GSE76893.SMC1A.A-549 140 bp overlap
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 168 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 285 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 239 bp overlap
SMC3 3 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 177 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 121 bp overlap
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 227 bp overlap
STAG1 3 datasets
ChIP HCAEC GSE101921.STAG1.HCAEC 155 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 263 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 263 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 94 bp overlap
Huangfu Lab · Publications · Resources · Contact