chr11 : 27,696,533 27,696,669
136 bp 21 TFs 1 linked gene
This 136 bp open chromatin element is linked to BDNF and is bound by 21 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
BDNF 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:27,691,533 – 27,701,669
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
CEBPA 1 dataset
ChIP SGBS GSE41629.CEBPA.SGBS 124 bp overlap
CEBPB 4 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 93 bp overlap
ChIP H1 ENCFF871PTR 136 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 136 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 134 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 136 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
EZH2 5 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 136 bp overlap
ChIP A673 ENCFF790MVL 136 bp overlap
ChIP A673 ENCFF790MVL 136 bp overlap
ChIP A673 ENCFF955JRZ 136 bp overlap
ChIP A673 ENCFF955JRZ 136 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 136 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 136 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 136 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 136 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 136 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 136 bp overlap
ChIP hESC GSE20650.NANOG.hESC 136 bp overlap
ChIP hESC GSE18292.NANOG.hESC 73 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 136 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 136 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 136 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 136 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 72 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 95 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 127 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 136 bp overlap
TP53 9 datasets
ChIP GM06170 GSE55727.TP53.GM06170 136 bp overlap
ChIP H9 GSE142050.TP53.H9 136 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 136 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 119 bp overlap
ChIP IMR-90_NUT3A GSE58740.TP53.IMR-90_NUT3A 85 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 87 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 120 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 117 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 136 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 136 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap