chr10 : 129,985,548 129,985,944
396 bp 16 TFs 3 linked genes
This 396 bp open chromatin element is linked to EBF3, GLRX3, and LINC02666 and is bound by 16 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
EBF3 26.0 kb Distal Multiome
GLRX3 150.6 kb Distal Multiome
LINC02666 200.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:129,980,548 – 129,990,944
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 396 bp overlap
ChIP DE DE-FOXA2-2 396 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 396 bp overlap
ChIP DE DE-GATA4-2 396 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 396 bp overlap
ChIP DE DE-GATA6-2 396 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 396 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
Nr2e1 1 dataset
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
SIX1 1 dataset
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 396 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 396 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 396 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 363 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 396 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Six4 1 dataset
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
THRA 1 dataset
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap