chr10 : 109,071,461 109,071,808
347 bp 15 TFs 0 linked genes
This 347 bp open chromatin element has no linked target genes and is bound by 15 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:109,066,461 – 109,076,808
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
CTCF 40 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 210 bp overlap
ChIP A673 ENCFF123WOM 89 bp overlap
ChIP BE2C ENCFF757SRF 240 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 158 bp overlap
ChIP GM23338 ENCFF772DML 169 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 130 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 126 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 125 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 109 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 117 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 142 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 297 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 154 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 163 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 188 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 269 bp overlap
ChIP RWPE2 ENCFF911IEE 347 bp overlap
ChIP RWPE2 ENCFF911IEE 215 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 134 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 190 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 154 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 132 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 127 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 102 bp overlap
ChIP brain ENCFF163BBN 329 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 231 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 180 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 157 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 253 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 282 bp overlap
ChIP hepatocyte ENCFF263BLJ 249 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 128 bp overlap
ChIP nephron ENCFF411ACD 317 bp overlap
ChIP nephron ENCFF589HXU 270 bp overlap
ChIP nephron ENCFF972IQB 307 bp overlap
ChIP nephron ENCFF972IQB 83 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 299 bp overlap
ChIP neural cell ENCFF335ADI 132 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 180 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 111 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 108 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 182 bp overlap
FOXA1 2 datasets
ChIP HepG2 ENCFF207NVJ 109 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 226 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 300 bp overlap
ChIP DE DE-FOXA2-2 291 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 144 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 181 bp overlap
GATA4 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 250 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 255 bp overlap
GATA6 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 148 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 191 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 235 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 108 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 223 bp overlap
RAD21 6 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 143 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 103 bp overlap
ChIP SK-N-SH ENCFF747MAS 175 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 143 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 239 bp overlap
ChIP neural cell ENCFF564MOT 184 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 139 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 268 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 163 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 184 bp overlap