chr10 : 90,876,525 – 90,876,965
440 bp 15 TFs 1 linked gene
This 440 bp open chromatin element is linked to RPP30 and is bound by 15 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RPP30 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:90,871,525 – 90,881,965
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 95 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 110 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 107 bp overlap
ChIP prostate_P19_T GSE130408.AR.prostate_P19_T 95 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 53 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 205 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 93 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 152 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 438 bp overlap
FOXA1 1 dataset
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 125 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 440 bp overlap
ChIP DE DE-FOXA2-2 440 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 440 bp overlap
ChIP DE DE-GATA4-2 440 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 440 bp overlap
ChIP DE DE-GATA6-2 440 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 369 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 276 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 276 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 384 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 274 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 407 bp overlap
HOXB13 2 datasets
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 145 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 103 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 196 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 187 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 339 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 263 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 345 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 299 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 260 bp overlap
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