chr1 : 188,599,417 – 188,599,602
185 bp 26 TFs 0 linked genes
This 185 bp open chromatin element has no linked target genes and is bound by 26 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:188,594,417 – 188,604,602
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 121 bp overlap
CTCF 126 datasets
ChIP 22Rv1 ENCFF466OXN 185 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 185 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 185 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 182 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 185 bp overlap
ChIP A549 ENCFF034FVO 185 bp overlap
ChIP BE2C ENCFF757SRF 185 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 185 bp overlap
ChIP C4-2B ENCFF821XVN 185 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 177 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 158 bp overlap
ChIP GM12878 ENCFF485TGR 132 bp overlap
ChIP GM23338 ENCFF531QOI 185 bp overlap
ChIP GM23338 ENCFF772DML 180 bp overlap
ChIP GM23338 ENCFF832KWE 185 bp overlap
ChIP H1 ENCFF764RHO 185 bp overlap
ChIP H9 ENCFF152GTF 185 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 171 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 150 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 185 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 185 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 185 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 172 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 183 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 185 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 185 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 185 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 185 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 150 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 142 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 182 bp overlap
ChIP HCT116 ENCFF003KHP 185 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 95 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 113 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 162 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 106 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 103 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 185 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 168 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 178 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 172 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 173 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 185 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 185 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 133 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 140 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 155 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 157 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 145 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 113 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 91 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 149 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 146 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 185 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 185 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 155 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 166 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 185 bp overlap
ChIP MCF-7 ENCFF198DQX 185 bp overlap
ChIP MCF-7 ENCFF494VXA 185 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 179 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 138 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 130 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 185 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 185 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 133 bp overlap
ChIP NCI-H929 ENCFF305JAB 185 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 185 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 179 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 181 bp overlap
ChIP PC-3 ENCFF487TUI 185 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 185 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 185 bp overlap
ChIP SK-N-SH ENCFF575DMG 185 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 185 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 185 bp overlap
ChIP SiHa GSE143026.CTCF.SiHa 111 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 185 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 177 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 159 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 169 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 185 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 185 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 148 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 176 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 159 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 168 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 185 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 185 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 184 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 185 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 185 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 133 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 130 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 185 bp overlap
ChIP chondrocyte ENCFF134ORZ 185 bp overlap
ChIP endodermal cell ENCFF471YCZ 185 bp overlap
ChIP endothelial cell ENCFF663LIE 185 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 140 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 159 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 127 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 145 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 173 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 185 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 185 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 185 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 185 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 185 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 185 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 185 bp overlap
ChIP neural crest cell ENCFF182LWK 185 bp overlap
ChIP neural progenitor cell ENCFF420RBO 146 bp overlap
ChIP neural progenitor cell ENCFF581WPG 185 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 185 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 130 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 185 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 185 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 164 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 154 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 158 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 185 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 185 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 90 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PLAGL2 1 dataset
Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RAD21 6 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 126 bp overlap
ChIP H1 ENCFF698EWO 185 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 90 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 74 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 185 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 185 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 100 bp overlap
SPI1 4 datasets
ChIP NB4 GSE128834.SPI1.NB4 170 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 105 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 163 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 159 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 171 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 185 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
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