chr9 : 112,882,421 – 112,882,609
188 bp 14 TFs 1 linked gene
This 188 bp open chromatin element is linked to SLC46A2 and is bound by 14 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SLC46A2 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:112,877,421 – 112,887,609
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
CTCF 177 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 188 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 188 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 162 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 171 bp overlap
ChIP CUTLL1_DMSO GSE130140.CTCF.CUTLL1_DMSO 188 bp overlap
ChIP CUTLL1_GSI GSE130140.CTCF.CUTLL1_GSI 162 bp overlap
ChIP Caco-2 ENCFF753NZV 188 bp overlap
ChIP Caco-2 ENCFF934QYS 188 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 125 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 165 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 188 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 188 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 168 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 178 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 188 bp overlap
ChIP GM12864 ENCFF357DQE 188 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 111 bp overlap
ChIP GM12865 ENCFF067GFI 188 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 178 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 179 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 188 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 188 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 184 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 188 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 154 bp overlap
ChIP GM12874 ENCFF942MTD 188 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 188 bp overlap
ChIP GM13977 ENCFF528ESQ 161 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 188 bp overlap
ChIP GM23338 ENCFF531QOI 117 bp overlap
ChIP GM23338 ENCFF772DML 186 bp overlap
ChIP H1 ENCFF414GZI 188 bp overlap
ChIP H1 ENCFF764RHO 188 bp overlap
ChIP H9 ENCFF152GTF 188 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 177 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 158 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 188 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 188 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 178 bp overlap
ChIP HCT116 ENCFF003KHP 188 bp overlap
ChIP HCT116 ENCFF209YMI 188 bp overlap
ChIP HEC-1-B GSE139679.CTCF.HEC-1-B 136 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 69 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 100 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 88 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 119 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 129 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 188 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 70 bp overlap
ChIP HEK293 ENCFF498RMM 188 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 162 bp overlap
ChIP HFF-Myc ENCFF680WYR 188 bp overlap
ChIP HFFc6 ENCFF005CJI 188 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 152 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 188 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 188 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 116 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 188 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 188 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 188 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 165 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 140 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 96 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 119 bp overlap
ChIP HepG2 ENCFF127KUP 180 bp overlap
ChIP HepG2 ENCFF194VBQ 188 bp overlap
ChIP HepG2 ENCFF348BUL 188 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 188 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 176 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 154 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 117 bp overlap
ChIP K-562 GSE110681.CTCF.K-562 124 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 103 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 125 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 137 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 153 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 171 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 179 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 188 bp overlap
ChIP K562 ENCFF400DFR 188 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 188 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 178 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 188 bp overlap
ChIP Loucy ENCFF359TVQ 188 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 188 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 161 bp overlap
ChIP MCF-7 ENCFF139NQI 188 bp overlap
ChIP MCF-7 ENCFF162GNE 188 bp overlap
ChIP MCF-7 ENCFF198DQX 188 bp overlap
ChIP MCF-7 ENCFF210JUZ 139 bp overlap
ChIP MCF-7 ENCFF414SZG 169 bp overlap
ChIP MCF-7 ENCFF424NQR 163 bp overlap
ChIP MCF-7 ENCFF494VXA 188 bp overlap
ChIP MCF-7 ENCFF844STM 163 bp overlap
ChIP MCF-7 ENCFF954TUV 183 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 188 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 188 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 188 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 163 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 126 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 141 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 110 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 188 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 186 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 188 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 188 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 152 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 147 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 188 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 122 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 188 bp overlap
ChIP NCI-H929 ENCFF305JAB 188 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 188 bp overlap
ChIP OCI-LY1 ENCFF455ESK 169 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 188 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 188 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 188 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 188 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 188 bp overlap
ChIP Panc1 ENCFF056JQX 188 bp overlap
ChIP Panc1 ENCFF056JQX 188 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 188 bp overlap
ChIP RWPE2 ENCFF911IEE 188 bp overlap
ChIP SEM GSE117864.CTCF.SEM 159 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 117 bp overlap
ChIP SK-N-SH ENCFF575DMG 181 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 188 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 138 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 116 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 179 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 121 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 148 bp overlap
ChIP VCaP ENCFF858YQT 188 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 188 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 136 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 188 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 153 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 183 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 188 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 180 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 188 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 138 bp overlap
ChIP endodermal cell ENCFF471YCZ 188 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 129 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 162 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 188 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 147 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 178 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 188 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 130 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 188 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 188 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 154 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 154 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP islet GSE23784.CTCF.islet 188 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 188 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 188 bp overlap
ChIP keratinocyte_mut2 GSE123711.CTCF.keratinocyte_mut2 89 bp overlap
ChIP kidney ENCFF335EKK 149 bp overlap
ChIP liver ENCSR254YRM.CTCF.liver 129 bp overlap
ChIP lower lobe of left lung ENCFF150FXW 188 bp overlap
ChIP lung_left_upper-lobe ENCSR027FSZ.CTCF.lung_left_upper-lobe 188 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 188 bp overlap
ChIP neural crest cell ENCFF182LWK 188 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 171 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 166 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 104 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 148 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 188 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 182 bp overlap
ChIP right lobe of liver ENCFF011NDG 156 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 188 bp overlap
ChIP upper lobe of left lung ENCFF277NLT 188 bp overlap
CTCFL 1 dataset
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 140 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 160 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 188 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 188 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 188 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 188 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 188 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 168 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 188 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 188 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 168 bp overlap
ESRRA 1 dataset
ChIP MCF-7 ENCFF569SII 188 bp overlap
OGG1 1 dataset
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 103 bp overlap
RAD21 7 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 150 bp overlap
ChIP H1 ENCFF698EWO 188 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 87 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 76 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 163 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 154 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 131 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 154 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 149 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 173 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 178 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 173 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 188 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 95 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 128 bp overlap
ZNF121 2 datasets
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 69 bp overlap
ChIP WTC11 ENCFF291API 74 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 188 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 143 bp overlap
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