chr9 : 99,508,252 99,508,962
710 bp 42 TFs 2 linked genes
This 710 bp open chromatin element is linked to SEC61B and ALG2 and is bound by 42 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SEC61B 286.4 kb Distal Multiome
ALG2 286.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:99,503,252 – 99,513,962
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 247 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 644 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 251 bp overlap
ChIP DE DE-FOXA2-1 311 bp overlap
ChIP DE DE-FOXA2-2 710 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 211 bp overlap
ChIP DE DE-GATA4-1 710 bp overlap
ChIP DE DE-GATA4-2 710 bp overlap
ChIP foregut GSE117136.GATA4.foregut 652 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 710 bp overlap
ChIP DE DE-GATA6-2 710 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 251 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 285 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 710 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 250 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 710 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Isl1 1 dataset
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 79 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NBN 1 dataset
ChIP MCF-10A GSE93038.NBN.MCF-10A 246 bp overlap
NKX2-4 1 dataset
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PROP1 1 dataset
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR076YPO.RNF2.K-562 72 bp overlap
Rhox11 1 dataset
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 222 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 662 bp overlap
SOX18 1 dataset
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SRY 1 dataset
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 85 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF547 1 dataset
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap