chr5 : 154,643,128 154,643,829
701 bp 15 TFs 7 linked genes
This 701 bp open chromatin element is linked to 7 target genes and is bound by 15 transcription factors.
Linked Genes
7 genes
Link type
Gene Expression Dist. to TSS Distance Link type
LARP1 39.4 kb Distal Multiome
SAP30L 197.6 kb Distal Multiome
SAP30L-AS1 197.8 kb Distal Multiome
FAXDC2 207.0 kb Distal Multiome+HiCAR
CNOT8 214.6 kb Distal Multiome+HiCAR
GEMIN5 294.6 kb Distal Multiome
MRPL22 297.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:154,638,128 – 154,648,829
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP C4-2B ENCFF821XVN 78 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 701 bp overlap
ChIP DE DE-FOXA2-2 701 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 603 bp overlap
ChIP DE DE-GATA4-2 701 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 580 bp overlap
ChIP DE DE-GATA6-2 701 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 507 bp overlap
MAFF 2 datasets
ChIP HepG2 ENCFF452YUT 65 bp overlap
ChIP K562 ENCFF071YKK 54 bp overlap
MAFG 1 dataset
ChIP K562 ENCFF455EEO 138 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF767LDG 55 bp overlap
Nr2e3 2 datasets
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_72h DE_72h-Nr2e3_MA0164.2 6 bp overlap
RUNX2 2 datasets
Motif DE_60h DE_60h-RUNX2_MA0511.2 9 bp overlap
Motif DE_72h DE_72h-RUNX2_MA0511.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 270 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 361 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 455 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 50 bp overlap
ZNF417 1 dataset
ChIP WA01 GSE144149.ZNF417.WA01 175 bp overlap
ZNF587 1 dataset
ChIP WA01 GSE144149.ZNF587.WA01 230 bp overlap