chr5 : 137,728,179 – 137,728,318
139 bp 14 TFs 1 linked gene
This 139 bp open chromatin element is linked to KLHL3 and is bound by 14 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KLHL3 7.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:137,723,179 – 137,733,318
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
CTCF 144 datasets
ChIP A-549 ENCSR000DYD.CTCF.A-549 118 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 139 bp overlap
ChIP A673 ENCFF123WOM 139 bp overlap
ChIP AG09309 ENCFF478XPS 139 bp overlap
ChIP BE2C ENCFF757SRF 139 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 134 bp overlap
ChIP Caco-2 ENCFF934QYS 139 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 129 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 131 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 139 bp overlap
ChIP GM23338 ENCFF772DML 139 bp overlap
ChIP H1 ENCFF414GZI 139 bp overlap
ChIP H1 ENCFF764RHO 139 bp overlap
ChIP H9 ENCFF152GTF 139 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 139 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 139 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 111 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 139 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 74 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 126 bp overlap
ChIP HFF-Myc ENCFF680WYR 139 bp overlap
ChIP HFFc6 ENCFF005CJI 139 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 126 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF348BUL 139 bp overlap
ChIP HepG2 ENCFF668CTD 121 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 139 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 139 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 138 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 79 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 125 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 97 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 103 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 118 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 58 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 139 bp overlap
ChIP K562 ENCFF400DFR 139 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 139 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 139 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 91 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 132 bp overlap
ChIP Loucy ENCFF359TVQ 139 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 139 bp overlap
ChIP MCF-7 ENCFF162GNE 139 bp overlap
ChIP MCF-7 ENCFF198DQX 139 bp overlap
ChIP MCF-7 ENCFF494VXA 139 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 139 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 139 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 139 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 139 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 139 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 122 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 139 bp overlap
ChIP Panc1 ENCFF056JQX 139 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 125 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 59 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 139 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 92 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 139 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 139 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 114 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 139 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 132 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 139 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 117 bp overlap
ChIP WI38 ENCFF841AXJ 139 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 139 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 139 bp overlap
ChIP body of pancreas ENCFF269EDN 139 bp overlap
ChIP body of pancreas ENCFF798MEO 139 bp overlap
ChIP brain ENCFF099ASU 139 bp overlap
ChIP brain ENCFF163BBN 139 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 139 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 139 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 139 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 139 bp overlap
ChIP chondrocyte ENCFF134ORZ 139 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 139 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 137 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF149PUN 139 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 139 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 139 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 139 bp overlap
ChIP endodermal cell ENCFF471YCZ 139 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 139 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 139 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 127 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 139 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 139 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 139 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 139 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 139 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 139 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 129 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 139 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 139 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 139 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 139 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 139 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 139 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 139 bp overlap
ChIP heart left ventricle ENCFF244ZHV 139 bp overlap
ChIP heart left ventricle ENCFF354HOQ 130 bp overlap
ChIP heart left ventricle ENCFF548XHH 139 bp overlap
ChIP heart left ventricle ENCFF769GAB 139 bp overlap
ChIP heart right ventricle ENCFF027ORH 139 bp overlap
ChIP heart right ventricle ENCFF435TKW 139 bp overlap
ChIP heart right ventricle ENCFF767XJQ 139 bp overlap
ChIP heart right ventricle ENCFF979TCT 139 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 139 bp overlap
ChIP hepatocyte ENCFF263BLJ 139 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 139 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 131 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 85 bp overlap
ChIP islet ERP004003.CTCF.islet 139 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 100 bp overlap
ChIP kidney ENCFF335EKK 139 bp overlap
ChIP kidney ENCSR000DMC.CTCF.kidney 90 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 139 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 139 bp overlap
ChIP neural progenitor cell ENCFF420RBO 139 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 139 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 139 bp overlap
ChIP osteoblast ENCFF491ZJZ 139 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 139 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 132 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 139 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 139 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 125 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 122 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 139 bp overlap
ChIP right atrium auricular region ENCFF696NTN 139 bp overlap
ChIP right lobe of liver ENCFF011NDG 139 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 139 bp overlap
ChIP smooth muscle cell ENCFF656FBT 139 bp overlap
ChIP thyroid gland ENCFF163TUI 139 bp overlap
ChIP thyroid gland ENCFF204HWS 139 bp overlap
ChIP thyroid gland ENCFF300RYK 139 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 139 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 139 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 139 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 139 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 139 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 136 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 139 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 139 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 139 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 139 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 123 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 139 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 139 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 139 bp overlap
JUN 1 dataset
ChIP myometrium_PT1063 GSE128230.JUN.myometrium_PT1063 58 bp overlap
MITF 2 datasets
ChIP 501-mel GSE137522.MITF.501-mel 137 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 70 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 139 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 70 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 79 bp overlap
RAD21 23 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 121 bp overlap
ChIP A549 ENCFF047SFC 139 bp overlap
ChIP H1 ENCFF698EWO 139 bp overlap
ChIP H1 ENCFF967OJF 139 bp overlap
ChIP HCT116 ENCFF568PEO 139 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 139 bp overlap
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 139 bp overlap
ChIP HepG2 ENCFF906QIS 139 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 139 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 96 bp overlap
ChIP K562 ENCFF634XYR 139 bp overlap
ChIP MCF-7 ENCFF724VCQ 139 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 136 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 123 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 139 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 130 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 133 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 130 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 109 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 139 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 139 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 126 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 139 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 139 bp overlap
STAG1 6 datasets
ChIP HCAEC GSE101921.STAG1.HCAEC 139 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 139 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 139 bp overlap
ChIP HepG2 ENCFF843EBZ 139 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 139 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 107 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 139 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 122 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 122 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 139 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 115 bp overlap
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