chr1 : 88,609,175 88,609,450
275 bp 15 TFs 0 linked genes
This 275 bp open chromatin element has no linked target genes and is bound by 15 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:88,604,175 – 88,614,450
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
ASCL1 4 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 138 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 155 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 175 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 180 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 275 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 275 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 275 bp overlap
CTCF 1 dataset
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 126 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 210 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 83 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 103 bp overlap
GATA4 6 datasets
ChIP G296S GSE85628.GATA4.G296S 196 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 196 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 214 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 242 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 168 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 143 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 198 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 198 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 199 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 181 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 208 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 154 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 275 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 233 bp overlap
REST 39 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 190 bp overlap
ChIP GM12878 ENCFF235NGC 166 bp overlap
ChIP GM12878 ENCFF943QPB 191 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 175 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 128 bp overlap
ChIP H1 ENCFF429RUE 178 bp overlap
ChIP HEK293 ENCFF073DOT 176 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 275 bp overlap
ChIP HL-60 ENCFF589LOF 176 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 275 bp overlap
ChIP HeLa-S3 ENCFF911DTC 111 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 183 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF122AWR 185 bp overlap
ChIP Ishikawa ENCFF456OHV 174 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 275 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 239 bp overlap
ChIP K-562 GSE70482.REST.K-562 141 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 199 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 150 bp overlap
ChIP K562 ENCFF430APM 168 bp overlap
ChIP K562 ENCFF758CZL 275 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 275 bp overlap
ChIP MCF-7 ENCFF893RRD 223 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 147 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 190 bp overlap
ChIP PFSK-1 ENCFF845VHA 210 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 150 bp overlap
ChIP Panc1 ENCFF518EEQ 275 bp overlap
ChIP Panc1 ENCFF518EEQ 261 bp overlap
ChIP SK-N-SH ENCFF635KBN 110 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 170 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 229 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 275 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 265 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 275 bp overlap
ChIP liver ENCFF577AZT 275 bp overlap
ChIP liver ENCSR893QWP.REST.liver 275 bp overlap
ChIP liver ENCSR867WPH.REST.liver 149 bp overlap
STAT3 2 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 91 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 87 bp overlap
TBX5 8 datasets
ChIP G296S GSE85628.TBX5.G296S 266 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 266 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 264 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 213 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 213 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 275 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 275 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 194 bp overlap