chr5 : 6,637,424 6,638,209
785 bp 16 TFs 2 linked genes
This 785 bp open chromatin element is linked to SRD5A1 and NSUN2 and is bound by 16 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SRD5A1 4.0 kb Proximal Proximity
NSUN2 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:6,632,424 – 6,643,209
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 227 bp overlap
BRD4 1 dataset
ChIP COLO-205 GSE73319.BRD4.COLO-205 473 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 139 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 285 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 435 bp overlap
ChIP DE DE-FOXA2-2 669 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 621 bp overlap
ChIP DE DE-GATA4-2 690 bp overlap
ChIP foregut GSE117136.GATA4.foregut 438 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 597 bp overlap
ChIP DE DE-GATA6-2 773 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 522 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 490 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 704 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 572 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 702 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 644 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 409 bp overlap
ChIP foregut GSE117136.GATA6.foregut 300 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 206 bp overlap
ChIP liver ENCFF449HPV 254 bp overlap
ChIP liver ERP002306.HNF4A.liver 207 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 184 bp overlap
ChIP liver ENCFF807CIA 451 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 283 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 290 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 485 bp overlap
ChIP liver ENCFF769YSM 511 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 150 bp overlap
TAF1 1 dataset
ChIP liver ENCFF610UQP 459 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 133 bp overlap
ZSCAN22 1 dataset
ChIP HepG2 ENCFF246MVE 631 bp overlap