chr5 : 3,174,952 3,175,416
464 bp 13 TFs 1 linked gene
This 464 bp open chromatin element is linked to LINC01377 and is bound by 13 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01377 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:3,169,952 – 3,180,416
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 93 bp overlap
DACH1 1 dataset
ChIP K-562 ENCSR030TJP.DACH1.K-562 234 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 464 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 287 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 268 bp overlap
GATA3 11 datasets
ChIP A1A3_Brg1KD_Dex GSE112491.GATA3.A1A3_Brg1KD_Dex 178 bp overlap
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 212 bp overlap
ChIP A1A3_EtOH GSE112491.GATA3.A1A3_EtOH 225 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 433 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 327 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 182 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 338 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 172 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 313 bp overlap
ChIP T47D-A1-2_Dex GSE112491.GATA3.T47D-A1-2_Dex 327 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 389 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 454 bp overlap
ChIP DE DE-GATA4-1 464 bp overlap
ChIP DE DE-GATA4-2 424 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 448 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 460 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 329 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 454 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 464 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 464 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 393 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 464 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 410 bp overlap
GMEB1 1 dataset
ChIP K-562 ENCSR928KOR.GMEB1.K-562 338 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 236 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 107 bp overlap
YBX1 1 dataset
ChIP HEL GSE146717.YBX1.HEL 434 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 221 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 238 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 220 bp overlap