chr4 : 187,606,935 – 187,607,225
290 bp 19 TFs 0 linked genes
This 290 bp open chromatin element has no linked target genes and is bound by 19 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:187,601,935 – 187,612,225
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
BRD4 5 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 233 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 54 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 290 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 89 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CTCF 116 datasets
ChIP 22Rv1 ENCFF466OXN 201 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 255 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 185 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 131 bp overlap
ChIP ASC GSE21366.CTCF.ASC 67 bp overlap
ChIP B cell ENCFF500PZO 279 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 192 bp overlap
ChIP C4-2B ENCFF821XVN 272 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 290 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 87 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 65 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 290 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 111 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 164 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 278 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 290 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 113 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 77 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 53 bp overlap
ChIP GM23338 ENCFF832KWE 259 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 252 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 94 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 210 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 56 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 290 bp overlap
ChIP HFFc6 ENCFF005CJI 132 bp overlap
ChIP HL-60 ERP008568.CTCF.HL-60 167 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 290 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 154 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 78 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 78 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 52 bp overlap
ChIP K-562 GSE92879.CTCF.K-562 102 bp overlap
ChIP K-562_Dox GSE92879.CTCF.K-562_Dox 100 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 144 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 162 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 90 bp overlap
ChIP MDM_dNS1 GSE103477.CTCF.MDM_dNS1 82 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 147 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 56 bp overlap
ChIP NCI-H929 ENCFF305JAB 64 bp overlap
ChIP NCI-H929 ENCFF305JAB 70 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 175 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 60 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 164 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 140 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 55 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 140 bp overlap
ChIP Panc1 ENCFF056JQX 207 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 56 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 81 bp overlap
ChIP RWPE2 ENCFF911IEE 164 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 153 bp overlap
ChIP SLK_CTCF-KD GSE138105.CTCF.SLK_CTCF-KD 190 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 133 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 139 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 74 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 83 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 73 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 56 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 134 bp overlap
ChIP VCaP ENCFF858YQT 138 bp overlap
ChIP VCaP ENCFF858YQT 148 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 142 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 75 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 276 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 82 bp overlap
ChIP astrocyte ENCFF558APA 290 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 75 bp overlap
ChIP brain ENCFF163BBN 85 bp overlap
ChIP brain ENCFF163BBN 104 bp overlap
ChIP chondrocyte ENCFF134ORZ 165 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 128 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 186 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 207 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 194 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF476NBQ 146 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF677SUG 208 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 197 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 184 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 192 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 75 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 75 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 144 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 117 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 55 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 187 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 77 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 82 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 71 bp overlap
ChIP heart left ventricle ENCFF769GAB 193 bp overlap
ChIP heart left ventricle ENCFF888ERQ 179 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 53 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 109 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 290 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 61 bp overlap
ChIP natural killer cell ENCFF517SNI 52 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 66 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 158 bp overlap
ChIP pancreas ENCFF315CUI 175 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 94 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 65 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 125 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 68 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 84 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 142 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 161 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 61 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 72 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 157 bp overlap
ChIP spleen ENCFF065CBS 205 bp overlap
ChIP spleen ENCFF139JDN 149 bp overlap
ChIP spleen ENCFF326DUY 210 bp overlap
ChIP spleen ENCSR343RJH.CTCF.spleen 121 bp overlap
ChIP tibial nerve ENCFF665IWH 180 bp overlap
ChIP upper lobe of left lung ENCFF170ORD 166 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 55 bp overlap
FOXA1 1 dataset
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 189 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 123 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 72 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 249 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 236 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 205 bp overlap
RAD21 27 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 65 bp overlap
ChIP A549 ENCFF264AHX 223 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 179 bp overlap
ChIP GP5D_SIRAD21 GSE51234.RAD21.GP5D_SIRAD21 130 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 246 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 97 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 290 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 173 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 85 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 290 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 268 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 211 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 290 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 182 bp overlap
ChIP K562 ENCFF066JWO 163 bp overlap
ChIP MDM GSE103477.RAD21.MDM 168 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 62 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 193 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 156 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 192 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 113 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 180 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 56 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 70 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 56 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 66 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 149 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 290 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 230 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 252 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 139 bp overlap
SMC1 4 datasets
ChIP DKO GSE131606.SMC1.DKO 86 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 194 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 159 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 243 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 90 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 199 bp overlap
SMC3 3 datasets
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 114 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 79 bp overlap
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 140 bp overlap
SOX2 1 dataset
ChIP HCC95 GSE137459.SOX2.HCC95 52 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 175 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 175 bp overlap
ChIP MCF-10A GSE101921.STAG1.MCF-10A 109 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 209 bp overlap
TP53 1 dataset
ChIP GM00011 GSE55727.TP53.GM00011 148 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 282 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 150 bp overlap
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