chr4 : 52,717,160 52,717,485
325 bp 16 TFs 5 linked genes
This 325 bp open chromatin element is linked to 5 target genes and is bound by 16 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
SNORA26 3.9 kb Proximal Proximity
MIR4449 4.5 kb Proximal Proximity
DANCR 4.7 kb Proximal Proximity
LINC01618 4.8 kb Proximal Proximity
ENSG00000286161 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:52,712,160 – 52,722,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
AGO1 3 datasets
ChIP K-562 GSE120104.AGO1.K-562 99 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 97 bp overlap
ChIP K562 ENCFF741BCI 199 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 85 bp overlap
BRD4 2 datasets
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 98 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 99 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 66 bp overlap
ETS1 1 dataset
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 134 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 103 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 150 bp overlap
POLR2A 11 datasets
ChIP H1 ENCFF566JSR 325 bp overlap
ChIP H1 ENCFF770YBQ 169 bp overlap
ChIP H1 ENCFF770YBQ 325 bp overlap
ChIP K562 ENCFF215CWW 325 bp overlap
ChIP PFSK-1 ENCFF576NIT 55 bp overlap
ChIP PFSK-1 ENCFF576NIT 267 bp overlap
ChIP SK-N-MC ENCFF088IVG 181 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 233 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 68 bp overlap
ChIP spleen ENCFF446ZGT 258 bp overlap
ChIP spleen ENCFF706IUS 146 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF508UTS 175 bp overlap
ChIP HepG2 ENCFF508UTS 325 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 241 bp overlap
ChIP K562 ENCFF967GRF 325 bp overlap
RBM22 3 datasets
ChIP HepG2 ENCFF292RVQ 99 bp overlap
ChIP HepG2 ENCFF561IAJ 104 bp overlap
ChIP HepG2 ENCFF561IAJ 325 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 166 bp overlap
SUPT5H 6 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 103 bp overlap
ChIP HCT-116_DMSO_pSer666 GSE138548.SUPT5H.HCT-116_DMSO_pSer666 82 bp overlap
ChIP K562 ENCFF902PAW 325 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 140 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 93 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 128 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF875HLX 242 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 85 bp overlap