chr4 : 33,286,644 – 33,287,459
815 bp 26 TFs 0 linked genes
This 815 bp open chromatin element has no linked target genes and is bound by 26 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:33,281,644 – 33,292,459
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
BRCA1 1 dataset
ChIP MCF-10A GSE40591.BRCA1.MCF-10A 311 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 175 bp overlap
CRY1 3 datasets
ChIP U2OS GSE44236.CRY1.U2OS 252 bp overlap
ChIP U2OS GSE130602.CRY1.U2OS 218 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 217 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 479 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 266 bp overlap
GATA2 4 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 612 bp overlap
ChIP DE DE-GATA4-2 535 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 4 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 523 bp overlap
ChIP DE DE-GATA6-2 534 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 605 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 663 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 615 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 567 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 665 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 792 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 632 bp overlap
ChIP foregut GSE117136.GATA6.foregut 423 bp overlap
GLIS2 1 dataset
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
Gata3 4 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 369 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 133 bp overlap
RARA::RXRA 1 dataset
Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 1 dataset
Motif DE_36h DE_36h-RARARXRG_MA1149.2 17 bp overlap
RUNX3 1 dataset
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 405 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 479 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 303 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 409 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 472 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 589 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 358 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 221 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 241 bp overlap
TRPS1 4 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
VEZF1 1 dataset
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 227 bp overlap
ZSCAN29 1 dataset
Motif DE_36h DE_36h-ZSCAN29_MA1602.2 11 bp overlap
ZSCAN4 1 dataset
Motif DE_36h DE_36h-ZSCAN4_MA1155.1 15 bp overlap
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