chr4 : 13,646,954 13,647,366
412 bp 22 TFs 1 linked gene
This 412 bp open chromatin element is linked to LINC01182 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01182 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:13,641,954 – 13,652,366
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 137 bp overlap
BRD4 1 dataset
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 218 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 205 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 195 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 286 bp overlap
ESR1 14 datasets
ChIP MCF-7 GSE45822.ESR1.MCF-7 315 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 196 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 297 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 132 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 151 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 118 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 170 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 175 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 280 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 212 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 225 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 275 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 208 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 243 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 207 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 140 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 395 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 335 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 294 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 140 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 140 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 216 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 326 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 362 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 314 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 340 bp overlap
NRF1 3 datasets
ChIP Hep-G2 ENCSR853ADA.NRF1.Hep-G2 209 bp overlap
ChIP Hep-G2 GSE97661.NRF1.Hep-G2 164 bp overlap
ChIP HepG2 ENCFF694NVY 412 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 134 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 393 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 246 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 276 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 267 bp overlap