chr3 : 180,684,886 180,685,265
379 bp 20 TFs 2 linked genes
This 379 bp open chromatin element is linked to CCDC39-AS1 and CCDC39 and is bound by 20 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CCDC39-AS1 4.8 kb Proximal Proximity
CCDC39 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:180,679,886 – 180,690,265
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 189 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 203 bp overlap
CHD8 2 datasets
ChIP T-47D GSE62428.CHD8.T-47D 248 bp overlap
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 249 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 241 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 312 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 174 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 163 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 169 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 176 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 168 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 276 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 146 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 167 bp overlap
TBP 7 datasets
ChIP H1 ENCFF859IIO 344 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 236 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 122 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 358 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 317 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 258 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 265 bp overlap
ZBTB6 2 datasets
ChIP HEK293 GSE76494.ZBTB6.HEK293 238 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 187 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 182 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 175 bp overlap