chr3 : 170,417,378 170,417,818
440 bp 21 TFs 2 linked genes
This 440 bp open chromatin element is linked to CLDN11 and ENSG00000285218 and is bound by 21 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CLDN11 1.0 kb Proximal Proximity
ENSG00000285218 1.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:170,412,378 – 170,422,818
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 140 bp overlap
ChIP K562 ENCFF403WPG 334 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 282 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 440 bp overlap
ChIP DE DE-FOXA2-2 440 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 81 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000DKA.GATA2.K-562 161 bp overlap
GATA3 2 datasets
ChIP T-47D GSE51274.GATA3.T-47D 137 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 201 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 224 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 183 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 161 bp overlap
ChIP DE DE-GATA4-1 421 bp overlap
ChIP DE DE-GATA4-2 440 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 419 bp overlap
ChIP DE DE-GATA6-2 440 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 402 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 440 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 440 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 440 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 440 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 392 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 116 bp overlap
ChIP K562 ENCFF348IBL 154 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 64 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 248 bp overlap
ChIP K562 ENCFF320GSD 57 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 242 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 209 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 68 bp overlap
ChIP K562 ENCFF286KMN 123 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 158 bp overlap
ChIP K562 ENCFF236IUS 79 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 278 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 375 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 360 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 368 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 266 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 440 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 102 bp overlap