chr3 : 165,299,830 165,300,374
544 bp 31 TFs 0 linked genes
This 544 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:165,294,830 – 165,305,374
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
CTCF 1 dataset
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 209 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 228 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 163 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 173 bp overlap
ChIP hESC GSE18292.NANOG.hESC 151 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Nanog 1 dataset
Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 202 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN29 1 dataset
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap