chr3 : 116,552,355 116,552,545
190 bp 18 TFs 1 linked gene
This 190 bp open chromatin element is linked to LINC00903 and is bound by 18 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00903 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:116,547,355 – 116,557,545
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-744 181 bp overlap
CTCF 1 dataset
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 63 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 110 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 176 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 189 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 96 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 130 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 189 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 164 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 101 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 160 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 190 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 190 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 190 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 190 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 162 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 144 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 144 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap