chr3 : 98,701,409 – 98,701,649
240 bp 14 TFs 0 linked genes
This 240 bp open chromatin element has no linked target genes and is bound by 14 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:98,696,409 – 98,706,649
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 138 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 141 bp overlap
BRD4 1 dataset
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 154 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 212 bp overlap
ERG 2 datasets
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 139 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 157 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 105 bp overlap
ChIP DE DE-FOXA2-1 240 bp overlap
ChIP DE DE-FOXA2-2 240 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 220 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 240 bp overlap
ChIP DE DE-GATA4-2 240 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 189 bp overlap
ChIP foregut GSE117136.GATA4.foregut 240 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 240 bp overlap
GATA6 9 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 234 bp overlap
ChIP DE DE-GATA6-1 240 bp overlap
ChIP DE DE-GATA6-2 240 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 144 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 240 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 223 bp overlap
ChIP foregut GSE117136.GATA6.foregut 240 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 240 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 240 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 143 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 136 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 127 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 240 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 207 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 240 bp overlap
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