chr3 : 21,547,219 21,547,613
394 bp 11 TFs 1 linked gene
This 394 bp open chromatin element is linked to ZNF385D-AS1 and is bound by 11 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ZNF385D-AS1 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:21,542,219 – 21,552,613
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
11 transcription factors
Source
Cell type
CTCF 35 datasets
ChIP GM23338 ENCFF531QOI 236 bp overlap
ChIP GM23338 ENCFF531QOI 102 bp overlap
ChIP GM23338 ENCFF772DML 181 bp overlap
ChIP H1 ENCFF414GZI 191 bp overlap
ChIP H1 ENCFF764RHO 213 bp overlap
ChIP H9 ENCFF152GTF 198 bp overlap
ChIP H9 ENCFF152GTF 106 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 152 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 184 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 160 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 149 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 111 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 299 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 126 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 181 bp overlap
ChIP K562 ENCFF082GOI 154 bp overlap
ChIP K562 ENCFF400DFR 195 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 115 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 185 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 161 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 98 bp overlap
ChIP endodermal cell ENCFF471YCZ 188 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 185 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 170 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 131 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 131 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 165 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 144 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 205 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 177 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 187 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 160 bp overlap
ChIP leukemia_DMSO-24h GSE142161.CTCF.leukemia_DMSO-24h 178 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 150 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 217 bp overlap
MEF2A 1 dataset
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEF2C 1 dataset
Motif ES_0h ES_0h-MEF2C_MA0497.2 11 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 204 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 110 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 179 bp overlap
ChIP K562 ENCFF427SDV 82 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 166 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF343 1 dataset
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCFF764ZIC 270 bp overlap