chr2 : 194,346,286 194,346,467
181 bp 22 TFs 1 linked gene
This 181 bp open chromatin element is linked to LINC01821 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01821 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:194,341,286 – 194,351,467
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 181 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 181 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 181 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 181 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 181 bp overlap
BRD4 7 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 181 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 99 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 181 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 181 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 181 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 172 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 181 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 181 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 181 bp overlap
ChIP neural cell ENCFF442QNK 181 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 181 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 165 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 181 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 163 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 173 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 137 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 181 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 181 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 181 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 181 bp overlap
RAD21 3 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 181 bp overlap
ChIP neural cell ENCFF564MOT 181 bp overlap
ChIP neural cell ENCFF564MOT 77 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 181 bp overlap
ChIP neural cell ENCFF882LXX 181 bp overlap
SMARCA4 5 datasets
ChIP NGP GSE134626.SMARCA4.NGP 181 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 152 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 181 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 181 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 176 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 181 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 181 bp overlap
ChIP NPC GSE122631.SOX2.NPC 50 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 181 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 84 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 181 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 121 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 157 bp overlap