chr2 : 105,736,265 105,736,695
430 bp 19 TFs 1 linked gene
This 430 bp open chromatin element is linked to NCK2 and is bound by 19 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NCK2 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:105,731,265 – 105,741,695
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 317 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 81 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 262 bp overlap
CTCF 94 datasets
ChIP Caco-2 ENCFF934QYS 164 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 125 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 106 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 171 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 185 bp overlap
ChIP GM23338 ENCFF531QOI 286 bp overlap
ChIP GM23338 ENCFF772DML 143 bp overlap
ChIP H1 ENCFF230QSV 143 bp overlap
ChIP H1 ENCFF414GZI 64 bp overlap
ChIP H1 ENCFF764RHO 99 bp overlap
ChIP H9 ENCFF152GTF 219 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 250 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 296 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 161 bp overlap
ChIP HCT116 ENCFF003KHP 298 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 67 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 152 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 187 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 116 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 222 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 230 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 133 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 110 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 182 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 151 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 138 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 160 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 135 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 138 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 79 bp overlap
ChIP HepG2 ENCFF127KUP 187 bp overlap
ChIP HepG2 ENCFF348BUL 150 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 140 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 148 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 137 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 127 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 166 bp overlap
ChIP K562 ENCFF082GOI 170 bp overlap
ChIP K562 ENCFF111MGE 177 bp overlap
ChIP K562 ENCFF400DFR 162 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 114 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 129 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 168 bp overlap
ChIP MCF-7 ENCFF139NQI 223 bp overlap
ChIP MCF-7 ENCFF162GNE 143 bp overlap
ChIP MCF-7 ENCFF198DQX 118 bp overlap
ChIP MCF-7 ENCFF210JUZ 155 bp overlap
ChIP MCF-7 ENCFF414SZG 91 bp overlap
ChIP MCF-7 ENCFF424NQR 69 bp overlap
ChIP MCF-7 ENCFF494VXA 118 bp overlap
ChIP MCF-7 ENCFF844STM 67 bp overlap
ChIP MCF-7 ENCFF954TUV 145 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 255 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 217 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 174 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 184 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 163 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 140 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 140 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 216 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 279 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 205 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 243 bp overlap
ChIP MCF-7L_t4 GSE108787.CTCF.MCF-7L_t4 164 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 166 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 94 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 112 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 168 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 115 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 212 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 167 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 102 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 122 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 195 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 112 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 430 bp overlap
ChIP endodermal cell ENCFF471YCZ 229 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 211 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 278 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 122 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 161 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 123 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 140 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 177 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 191 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 164 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 83 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 192 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 132 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 172 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 195 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 163 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 222 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 129 bp overlap
ESR1 11 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 209 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 206 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 196 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 210 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 208 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 199 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 205 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 208 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 196 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 199 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 62 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 157 bp overlap
ChIP DE DE-GATA4-2 111 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 289 bp overlap
ChIP DE DE-GATA6-2 65 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 87 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 91 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 73 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF128TYE 85 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 63 bp overlap
RAD21 19 datasets
ChIP H1 ENCFF698EWO 105 bp overlap
ChIP H1 ENCFF967OJF 173 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 142 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 111 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 127 bp overlap
ChIP HepG2 ENCFF906QIS 135 bp overlap
ChIP K562 ENCFF634XYR 218 bp overlap
ChIP MCF-7 ENCFF694KOM 213 bp overlap
ChIP MCF-7 ENCFF724VCQ 71 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 180 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 162 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 164 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 204 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 140 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 121 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 180 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 142 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 149 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 177 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 65 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 147 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 190 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 140 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 261 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 295 bp overlap