DE-6

DE-6.2

Submodule 29 genes

Nitrogen compound transport and secretion

This module contains 29 genes including GRK2, PAK4, SOCS2, CSNK1E, and MAP2K7, with enrichment in nitrogen compound transport, export from cell, and secretion. Knockdown of FOXA2 activates this module, while knockdown of SOX17 and EOMES represses it. These regulatory patterns suggest that during ESC-to-DE differentiation, this secretory module is suppressed by SOX17 and EOMES but released from FOXA2-mediated inhibition.


TF Regulatory Network

Direction indicates the effect of TF knockdown on this submodule (↑ = KD upregulates; ↓ = KD downregulates).

Evidence: Direction: Max binding-only shown:
Perturbation + Binding
Perturbation only
Binding only
TF Dir NES #gRNA padj Bind OR

Enriched Terms

GO terms and pathway annotations enriched in this gene set (g:Profiler).


Module Genes (29)

All genes assigned to this co-expression submodule.

Gene Type Publications

Local co-expression graph for member genes built from Hotspot z-scores. Adjust the z-score threshold and repulsion sliders to explore the neighbourhood.

Gene Co-expression Network

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Low
High z