DE-3

DE-3.30

Submodule 13 genes

DNA damage response and protein modification

This module contains 13 genes including MDM4, POT1, DCAF1, ZDHHC17, and TTI1, with top enriched terms related to DNA damage response, protein ubiquitination, and cellular stress pathways. Knockdown of SOX17, NANOG, and OCT4 activates this module. Knockdown of FOXA2, GATA4, and GATA6 represses this module.


TF Regulatory Network

Direction indicates the effect of TF knockdown on this submodule (↑ = KD upregulates; ↓ = KD downregulates).

Evidence: Direction: Max binding-only shown:
Perturbation + Binding
Perturbation only
Binding only
TF Dir NES #gRNA padj Bind OR

Enriched Terms

GO terms and pathway annotations enriched in this gene set (g:Profiler).


Module Genes (13)

All genes assigned to this co-expression submodule.

Gene Type Publications

Local co-expression graph for member genes built from Hotspot z-scores. Adjust the z-score threshold and repulsion sliders to explore the neighbourhood.

Gene Co-expression Network

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Low
High z