DE-2

DE-2.6

Submodule 25 genes

FGF signaling and extracellular matrix remodeling

This module contains 25 genes including FGF1, CEMIP, and MSRA, with enrichment in extracellular matrix organization and growth factor signaling. Knockdown of ARID1A represses this module, suggesting that ARID1A activity is required for its expression during ESC-to-DE differentiation.

Notable genes: FGF1 CEMIP MSRA OSBP2 RIN3 SZT2 AFG1L FRMD3 Top TFs: ARID1A

TF Regulatory Network

Direction indicates the effect of TF knockdown on this submodule (↑ = KD upregulates; ↓ = KD downregulates).

Evidence: Direction: Max binding-only shown:
Perturbation + Binding
Perturbation only
Binding only
TF Dir NES #gRNA padj Bind OR

Enriched Terms

GO terms and pathway annotations enriched in this gene set (g:Profiler).


Module Genes (18)

All genes assigned to this co-expression submodule.

Gene Type Publications

Local co-expression graph for member genes built from Hotspot z-scores. Adjust the z-score threshold and repulsion sliders to explore the neighbourhood.

Gene Co-expression Network

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Low
High z