chr12 : 65,598,542 – 65,599,032
490 bp 12 TFs 1 linked gene
This 490 bp open chromatin element is linked to LINC02454 and is bound by 12 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02454 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:65,593,542 – 65,604,032
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 161 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 490 bp overlap
ChIP DE DE-FOXA2-2 490 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 490 bp overlap
ChIP DE DE-GATA4-2 490 bp overlap
ChIP foregut GSE117136.GATA4.foregut 462 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 490 bp overlap
ChIP DE DE-GATA6-2 437 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 275 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 348 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 404 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 490 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 364 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 490 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 339 bp overlap
ChIP foregut GSE117136.GATA6.foregut 223 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCFF551NEQ 60 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 425 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 140 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 202 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 275 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 404 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 239 bp overlap
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 320 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 405 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 290 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 490 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 285 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 438 bp overlap
SRF 4 datasets
ChIP H1 ENCFF036PEF 225 bp overlap
ChIP HCT116 ENCFF497JOF 352 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 132 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 225 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 71 bp overlap
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