chr12 : 40,534,695 40,535,246
551 bp 19 TFs 0 linked genes
This 551 bp open chromatin element has no linked target genes and is bound by 19 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:40,529,695 – 40,540,246
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 288 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 285 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 190 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 243 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 218 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 219 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 482 bp overlap
ChIP DE DE-FOXA2-2 434 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 217 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 454 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 300 bp overlap
ChIP DE DE-GATA6-2 350 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 364 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 435 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 407 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 290 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 426 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 416 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 123 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
KDM5B 1 dataset
ChIP SUM185 GSE46055.KDM5B.SUM185 111 bp overlap
NANOG 4 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 247 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 499 bp overlap
ChIP hESC GSE18292.NANOG.hESC 141 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 213 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 161 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 157 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 163 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 281 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 299 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 164 bp overlap