chr9 : 36,188,047 36,188,562
515 bp 13 TFs 5 linked genes
This 515 bp open chromatin element is linked to 5 target genes and is bound by 13 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CLTA 2.4 kb Proximal Proximity
GLIPR2 51.7 kb Distal Multiome
GNE 70.1 kb Distal Multiome
RECK 151.4 kb Distal Multiome
RNF38 299.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:36,183,047 – 36,193,562
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 50 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 200 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 166 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 166 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 515 bp overlap
ChIP DE DE-FOXA2-2 445 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 75 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 481 bp overlap
ChIP DE DE-GATA4-2 491 bp overlap
ChIP foregut GSE117136.GATA4.foregut 419 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 415 bp overlap
ChIP DE DE-GATA6-2 473 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 412 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 431 bp overlap
ChIP foregut GSE117136.GATA6.foregut 389 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 452 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 339 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 359 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 296 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 515 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 164 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 98 bp overlap