chr6 : 81,618,856 – 81,619,259
403 bp 12 TFs 1 linked gene
This 403 bp open chromatin element is linked to RNA5SP210 and is bound by 12 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNA5SP210 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:81,613,856 – 81,624,259
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
ATF3 1 dataset
ChIP HCT116 ENCFF088WVX 304 bp overlap
CTCF 102 datasets
ChIP 22Rv1 ENCFF466OXN 353 bp overlap
ChIP 22Rv1 ENCFF466OXN 403 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 244 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 148 bp overlap
ChIP A673 ENCFF123WOM 249 bp overlap
ChIP AG09309 ENCFF478XPS 136 bp overlap
ChIP BE2C ENCFF757SRF 198 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 132 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 83 bp overlap
ChIP H1 ENCFF764RHO 128 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 107 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 125 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 93 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 137 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 97 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 118 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 165 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 105 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 403 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 184 bp overlap
ChIP HCT116 ENCFF003KHP 58 bp overlap
ChIP HCT116 ENCFF209YMI 166 bp overlap
ChIP HEC-1-B GSE139679.CTCF.HEC-1-B 146 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 85 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 190 bp overlap
ChIP HFFc6 ENCFF005CJI 252 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 59 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 50 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 142 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 116 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 142 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 101 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 106 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 168 bp overlap
ChIP HeLa-S3 ENCFF626XQK 119 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 254 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 51 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 54 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 144 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 141 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 107 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 105 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 94 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 52 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 175 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 96 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 96 bp overlap
ChIP Loucy ENCFF359TVQ 230 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 218 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 111 bp overlap
ChIP MCF-7 ENCFF139NQI 138 bp overlap
ChIP MCF-7 ENCFF162GNE 102 bp overlap
ChIP MCF-7 ENCFF198DQX 118 bp overlap
ChIP MCF-7 ENCFF210JUZ 54 bp overlap
ChIP MCF-7 ENCFF494VXA 119 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 216 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 105 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 117 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 121 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 56 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 105 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 168 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 136 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 235 bp overlap
ChIP NCI-H929 ENCFF305JAB 295 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 218 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 51 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 120 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 228 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 150 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 74 bp overlap
ChIP SK-N-SH ENCFF575DMG 221 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 130 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 166 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 117 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 154 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 115 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 190 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 160 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 133 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 94 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 55 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 151 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 90 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 143 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 105 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 122 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 122 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 217 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 101 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 54 bp overlap
ChIP endodermal cell ENCFF471YCZ 215 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 315 bp overlap
ChIP islet ERP004003.CTCF.islet 162 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 118 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 142 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 95 bp overlap
ChIP placenta ENCFF029PHY 107 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 80 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 57 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 77 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 226 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 216 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 106 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 145 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 153 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 111 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 129 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 124 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 115 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 128 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 185 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 119 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 314 bp overlap
ChIP DE DE-FOXA2-2 270 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 169 bp overlap
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 305 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 188 bp overlap
RAD21 8 datasets
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 101 bp overlap
ChIP HCT116 ENCFF568PEO 144 bp overlap
ChIP MCF-7 ENCFF694KOM 194 bp overlap
ChIP MCF-7 ENCFF724VCQ 114 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 106 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 80 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 111 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 114 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 129 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 129 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 117 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 90 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 137 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 295 bp overlap
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