Transcription factors with Perturb-seq knockdown data for RNA5SP210. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RNA5SP210 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RNA5SP210, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr6:81,614,250–81,614,830 | 7.4 kb | Proximal (<10kb) | 136 | |
| chr6:81,618,856–81,619,259 | 2.9 kb | Proximal (<10kb) | 12 | |
| chr6:81,620,355–81,620,983 | 1.2 kb | Proximal (<10kb) | 19 | |
| chr6:81,622,153–81,622,313 | at TSS | At TSS | 6 | |
| chr6:81,622,956–81,623,908 | 757 bp | At TSS | 131 |
Genomic view of the RNA5SP210 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.