chr5 : 1,894,261 1,894,531
270 bp 14 TFs 2 linked genes
This 270 bp open chromatin element is linked to CTD-2194D22.4 and IRX4 and is bound by 14 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CTD-2194D22.4 6.9 kb Proximal Proximity
IRX4 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:1,889,261 – 1,899,531
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 99 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 101 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 222 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 179 bp overlap
EZH2 6 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 106 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 270 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 80 bp overlap
ChIP T98G GSE112240.EZH2.T98G 270 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 167 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 105 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 270 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 270 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 224 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 270 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 270 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 270 bp overlap
MYCN 2 datasets
ChIP NGP GSE80151.MYCN.NGP 192 bp overlap
ChIP NGP GSE80151.MYCN.NGP 192 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 245 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 270 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 114 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 270 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 270 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 269 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 163 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 227 bp overlap