chr4 : 169,347,007 169,347,496
489 bp 18 TFs 3 linked genes
This 489 bp open chromatin element is linked to SH3RF1, NEK1, and CLCN3 and is bound by 18 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SH3RF1 76.3 kb Distal Multiome
NEK1 265.4 kb Distal Multiome
CLCN3 273.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:169,342,007 – 169,352,496
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 291 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 347 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 166 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 349 bp overlap
ChIP DE DE-FOXA2-2 368 bp overlap
GATA2 3 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 152 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 335 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 211 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 458 bp overlap
ChIP DE DE-GATA4-2 489 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 452 bp overlap
ChIP foregut GSE117136.GATA4.foregut 266 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 489 bp overlap
ChIP DE DE-GATA6-2 489 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 282 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 338 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 388 bp overlap
ChIP foregut GSE117136.GATA6.foregut 429 bp overlap
HOXB13 4 datasets
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 75 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 103 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 102 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 51 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 325 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 278 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 53 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 467 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 350 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 489 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 489 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 489 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 489 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 489 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 489 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 166 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 489 bp overlap