chr4 : 74,306,733 – 74,306,985
252 bp 27 TFs 0 linked genes
This 252 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:74,301,733 – 74,311,985
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 252 bp overlap
CTCF 97 datasets
ChIP AG04450 ENCFF116DJL 252 bp overlap
ChIP AG09309 ENCFF478XPS 237 bp overlap
ChIP GM12873 ENCFF711LOS 228 bp overlap
ChIP GM23338 ENCFF531QOI 252 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GM23338 ENCFF832KWE 252 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 252 bp overlap
ChIP H9 ENCFF152GTF 245 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 252 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 252 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 109 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 184 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 252 bp overlap
ChIP HCT116 ENCFF003KHP 108 bp overlap
ChIP HCT116 ENCFF209YMI 239 bp overlap
ChIP HCT116 ENCFF373YMA 252 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 252 bp overlap
ChIP HeLa-S3 ENCFF626XQK 236 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 152 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 229 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 226 bp overlap
ChIP HepG2 ENCFF348BUL 189 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 252 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 108 bp overlap
ChIP LNCAP ENCFF700QXT 252 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP MCF 10A ENCFF988BGF 252 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 144 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 252 bp overlap
ChIP MCF-7 ENCFF139NQI 230 bp overlap
ChIP MCF-7 ENCFF162GNE 217 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 59 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 252 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 252 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 252 bp overlap
ChIP MCF-7L_t4 GSE108787.CTCF.MCF-7L_t4 131 bp overlap
ChIP MM.1S ENCFF869JMQ 252 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 252 bp overlap
ChIP NCI-H929 ENCFF305JAB 114 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 232 bp overlap
ChIP OCI-LY1 ENCFF455ESK 252 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 252 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 252 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 154 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 252 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 107 bp overlap
ChIP PC-3 ENCFF487TUI 252 bp overlap
ChIP PC-3 ENCFF487TUI 215 bp overlap
ChIP Panc1 ENCFF056JQX 252 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 252 bp overlap
ChIP RWPE2 ENCFF911IEE 240 bp overlap
ChIP SK-N-SH ENCFF575DMG 134 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 252 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 215 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 248 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 238 bp overlap
ChIP chondrocyte ENCFF134ORZ 192 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 252 bp overlap
ChIP endodermal cell ENCFF471YCZ 252 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 122 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 246 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 229 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 252 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 252 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 192 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 130 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 252 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 196 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 228 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 219 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCFF667ULX 252 bp overlap
ChIP keratinocyte ENCFF805QIE 252 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 252 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 104 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 181 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 98 bp overlap
ChIP left lung ENCFF620MAT 252 bp overlap
ChIP left lung ENCFF620MAT 171 bp overlap
ChIP neural crest cell ENCFF182LWK 119 bp overlap
ChIP neural progenitor cell ENCFF420RBO 170 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 119 bp overlap
ChIP osteoblast ENCFF491ZJZ 252 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 252 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 252 bp overlap
ChIP placenta ENCFF029PHY 252 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 252 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 252 bp overlap
ChIP smooth muscle cell ENCFF656FBT 193 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 252 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 236 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 152 bp overlap
ChIP MCF-7 ENCFF116OCS 252 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 132 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 252 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 184 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 252 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 252 bp overlap
ChIP HCT116 ENCFF568PEO 131 bp overlap
ChIP K562 ENCFF634XYR 252 bp overlap
ChIP MCF-7 ENCFF694KOM 252 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 252 bp overlap
RARB 1 dataset
Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_12h DE_12h-RARG_MA1553.2 13 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 252 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 81 bp overlap
TCF12 1 dataset
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Huangfu Lab · Publications · Resources · Contact