chr3 : 181,998,713 181,999,159
446 bp 15 TFs 1 linked gene
This 446 bp open chromatin element is linked to LINC01206 and is bound by 15 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01206 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:181,993,713 – 182,004,159
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 164 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 128 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 275 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 154 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 68 bp overlap
ESR1 1 dataset
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 87 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 251 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 186 bp overlap
FOXA1 3 datasets
ChIP T-47D GSE72249.FOXA1.T-47D 65 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 66 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 86 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 446 bp overlap
ChIP DE DE-FOXA2-2 446 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 367 bp overlap
ChIP DE DE-GATA4-2 446 bp overlap
ChIP foregut GSE117136.GATA4.foregut 264 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 446 bp overlap
ChIP DE DE-GATA6-2 446 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 353 bp overlap
ChIP foregut GSE117136.GATA6.foregut 329 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 280 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 282 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 229 bp overlap