chr3 : 7,377,126 7,378,191
1,065 bp 30 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 30 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:7,372,126 – 7,383,191
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 89 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 462 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 725 bp overlap
ChIP DE DE-FOXA2-2 728 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 588 bp overlap
ChIP DE DE-GATA4-2 740 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 569 bp overlap
ChIP DE DE-GATA6-2 610 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 430 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 737 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 478 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 301 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 494 bp overlap
HES6 1 dataset
Motif DE_36h DE_36h-HES6_MA1493.1 10 bp overlap
HES7 1 dataset
Motif DE_36h DE_36h-HES7_MA0822.1 12 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 535 bp overlap
KDM3A 1 dataset
ChIP 22Rv1_shKDM3A GSE109748.KDM3A.22Rv1_shKDM3A 139 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 201 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 439 bp overlap
NR1I3 1 dataset
Motif DE_36h DE_36h-NR1I3_MA1534.2 8 bp overlap
PAX3-FOXO1 2 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 241 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 177 bp overlap
PKNOX2 1 dataset
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
RARA 1 dataset
Motif DE_36h DE_36h-RARA_MA0730.1 17 bp overlap
RREB1 1 dataset
Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap
Rarb 1 dataset
Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 635 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 486 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 662 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 1049 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 553 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 66 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 401 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 503 bp overlap
SPI1 1 dataset
ChIP EM-3 GSE128834.SPI1.EM-3 158 bp overlap
Six3 1 dataset
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 484 bp overlap
Zfp335 1 dataset
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap