chr1 : 50,027,892 50,028,178
286 bp 13 TFs 2 linked genes
This 286 bp open chromatin element is linked to ELAVL4 and AGBL4 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ELAVL4 3.9 kb Proximal Proximity
AGBL4 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,022,892 – 50,033,178
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 168 bp overlap
ChIP VCaP GSE148358.AR.VCaP 138 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 104 bp overlap
ESR1 1 dataset
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 221 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 286 bp overlap
ChIP DE DE-FOXA2-2 286 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 143 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 143 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 191 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 188 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 148 bp overlap
GATA3 1 dataset
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 118 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 286 bp overlap
ChIP DE DE-GATA4-2 286 bp overlap
ChIP foregut GSE117136.GATA4.foregut 286 bp overlap
GATA6 9 datasets
ChIP AGS GSE51705.GATA6.AGS 144 bp overlap
ChIP DE DE-GATA6-1 286 bp overlap
ChIP DE DE-GATA6-2 286 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 286 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 286 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 286 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 214 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 115 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 243 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 260 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 214 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 276 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 239 bp overlap