chr1 : 48,248,368 48,248,811
443 bp 13 TFs 1 linked gene
This 443 bp open chromatin element is linked to SLC5A9 and is bound by 13 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SLC5A9 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:48,243,368 – 48,253,811
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 287 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 174 bp overlap
ESR1 4 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 344 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 323 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 362 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 217 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 52 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 180 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 159 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 240 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 103 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 170 bp overlap
POLR2A 2 datasets
ChIP HepG2 ENCFF736SLT 317 bp overlap
ChIP HepG2 ENCFF736SLT 61 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 324 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 306 bp overlap
ChIP HepG2 ENCFF939HTZ 306 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 430 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 443 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 443 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 443 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 433 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 326 bp overlap